Cluster: MGYG000000303_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000303
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000303_2 | MGYG000000303_2_45 | 50264 | 51385 | - | 3.A.1.1.23 |
| TC | MGYG000000303_2 | MGYG000000303_2_46 | 51424 | 52725 | - | 3.A.1.1.3 |
| TC | MGYG000000303_2 | MGYG000000303_2_47 | 52749 | 53636 | - | 3.A.1.1.3 |
| TC | MGYG000000303_2 | MGYG000000303_2_48 | 53633 | 54616 | - | 3.A.1.1.7 |
| pfam | MGYG000000303_2 | MGYG000000303_2_49 | 54805 | 55401 | + | dUTPase | DCD_N | DCD_C | DCD |
| NULL(UNKNOWN) | MGYG000000303_2 | MGYG000000303_2_50 | 55398 | 56549 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000303_2 | MGYG000000303_2_51 | 56674 | 58398 | + | 2.A.1.3.33 |
| pfam | MGYG000000303_2 | MGYG000000303_2_52 | 58466 | 58735 | + | DUF4235 |
| STP | MGYG000000303_2 | MGYG000000303_2_53 | 58951 | 60006 | + | SBP_bac_1 |
| TC | MGYG000000303_2 | MGYG000000303_2_54 | 60014 | 61684 | + | 3.A.1.19.3 |
| TC | MGYG000000303_2 | MGYG000000303_2_55 | 61684 | 62727 | + | 3.A.1.19.3 |
| pfam | MGYG000000303_2 | MGYG000000303_2_56 | 62681 | 64369 | - | PQQ_2 |
| CAZyme | MGYG000000303_2 | MGYG000000303_2_57 | 64663 | 65505 | + | GT81 |
Gene ID: MGYG000000303_2_45
Type: TC
Location: 50264 - 51385 (-)
Type: TC
Location: 50264 - 51385 (-)
Gene ID: MGYG000000303_2_46
Type: TC
Location: 51424 - 52725 (-)
Type: TC
Location: 51424 - 52725 (-)
Gene ID: MGYG000000303_2_47
Type: TC
Location: 52749 - 53636 (-)
Type: TC
Location: 52749 - 53636 (-)
Gene ID: MGYG000000303_2_48
Type: TC
Location: 53633 - 54616 (-)
Type: TC
Location: 53633 - 54616 (-)
Gene ID: MGYG000000303_2_49
Type: pfam
Location: 54805 - 55401 (+)
Type: pfam
Location: 54805 - 55401 (+)
Gene ID: MGYG000000303_2_50
Type:
Location: 55398 - 56549 (+)
Type:
Location: 55398 - 56549 (+)
Gene ID: MGYG000000303_2_51
Type: TC
Location: 56674 - 58398 (+)
Type: TC
Location: 56674 - 58398 (+)
Gene ID: MGYG000000303_2_52
Type: pfam
Location: 58466 - 58735 (+)
Type: pfam
Location: 58466 - 58735 (+)
Gene ID: MGYG000000303_2_53
Type: STP
Location: 58951 - 60006 (+)
Type: STP
Location: 58951 - 60006 (+)
Gene ID: MGYG000000303_2_54
Type: TC
Location: 60014 - 61684 (+)
Type: TC
Location: 60014 - 61684 (+)
Gene ID: MGYG000000303_2_55
Type: TC
Location: 61684 - 62727 (+)
Type: TC
Location: 61684 - 62727 (+)
Gene ID: MGYG000000303_2_56
Type: pfam
Location: 62681 - 64369 (-)
Type: pfam
Location: 62681 - 64369 (-)
Gene ID: MGYG000000303_2_57
Type: CAZyme
Location: 64663 - 65505 (+)
Type: CAZyme
Location: 64663 - 65505 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.