Cluster: MGYG000000303_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000303
- CGC Family ID: CGCFAM_00691
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000303_6 | MGYG000000303_6_47 | 46143 | 47768 | - | GH36 |
| STP | MGYG000000303_6 | MGYG000000303_6_48 | 47801 | 49150 | - | SBP_bac_1 |
| TC | MGYG000000303_6 | MGYG000000303_6_49 | 49173 | 50069 | - | 3.A.1.1.36 |
| TC | MGYG000000303_6 | MGYG000000303_6_50 | 50085 | 51059 | - | 3.A.1.1.20 |
| pfam | MGYG000000303_6 | MGYG000000303_6_51 | 51156 | 52316 | + | ROK |
| CAZyme | MGYG000000303_6 | MGYG000000303_6_52 | 52335 | 53633 | + | GH16_24 |
Gene ID: MGYG000000303_6_47
Type: CAZyme
Location: 46143 - 47768 (-)
Type: CAZyme
Location: 46143 - 47768 (-)
Gene ID: MGYG000000303_6_48
Type: STP
Location: 47801 - 49150 (-)
Type: STP
Location: 47801 - 49150 (-)
Gene ID: MGYG000000303_6_49
Type: TC
Location: 49173 - 50069 (-)
Type: TC
Location: 49173 - 50069 (-)
Gene ID: MGYG000000303_6_50
Type: TC
Location: 50085 - 51059 (-)
Type: TC
Location: 50085 - 51059 (-)
Gene ID: MGYG000000303_6_51
Type: pfam
Location: 51156 - 52316 (+)
Type: pfam
Location: 51156 - 52316 (+)
Gene ID: MGYG000000303_6_52
Type: CAZyme
Location: 52335 - 53633 (+)
Type: CAZyme
Location: 52335 - 53633 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.