Cluster: MGYG000000288_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000288
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000288_13 | MGYG000000288_13_6 | 5413 | 6855 | + | 3.A.1.8.1 |
| TC | MGYG000000288_13 | MGYG000000288_13_7 | 6859 | 7929 | + | 3.A.1.1.3 |
| pfam | MGYG000000288_13 | MGYG000000288_13_8 | 8374 | 9657 | + | HGD-D |
| TC | MGYG000000288_13 | MGYG000000288_13_9 | 9842 | 11452 | + | 3.A.1.5.11 |
| TC | MGYG000000288_13 | MGYG000000288_13_10 | 11541 | 12494 | + | 3.A.1.5.39 |
| TC | MGYG000000288_13 | MGYG000000288_13_11 | 12491 | 13321 | + | 3.A.1.5.39 |
| TC | MGYG000000288_13 | MGYG000000288_13_12 | 13325 | 14320 | + | 3.A.1.5.37 |
| TC | MGYG000000288_13 | MGYG000000288_13_13 | 14310 | 15095 | + | 3.A.1.5.36 |
| pfam | MGYG000000288_13 | MGYG000000288_13_14 | 15172 | 16335 | + | HGD-D |
| pfam | MGYG000000288_13 | MGYG000000288_13_15 | 16491 | 17255 | + | BcrAD_BadFG |
| CAZyme | MGYG000000288_13 | MGYG000000288_13_16 | 17270 | 18487 | + | GT4 |
Gene ID: MGYG000000288_13_6
Type: TC
Location: 5413 - 6855 (+)
Type: TC
Location: 5413 - 6855 (+)
Gene ID: MGYG000000288_13_7
Type: TC
Location: 6859 - 7929 (+)
Type: TC
Location: 6859 - 7929 (+)
Gene ID: MGYG000000288_13_8
Type: pfam
Location: 8374 - 9657 (+)
Type: pfam
Location: 8374 - 9657 (+)
Gene ID: MGYG000000288_13_9
Type: TC
Location: 9842 - 11452 (+)
Type: TC
Location: 9842 - 11452 (+)
Gene ID: MGYG000000288_13_10
Type: TC
Location: 11541 - 12494 (+)
Type: TC
Location: 11541 - 12494 (+)
Gene ID: MGYG000000288_13_11
Type: TC
Location: 12491 - 13321 (+)
Type: TC
Location: 12491 - 13321 (+)
Gene ID: MGYG000000288_13_12
Type: TC
Location: 13325 - 14320 (+)
Type: TC
Location: 13325 - 14320 (+)
Gene ID: MGYG000000288_13_13
Type: TC
Location: 14310 - 15095 (+)
Type: TC
Location: 14310 - 15095 (+)
Gene ID: MGYG000000288_13_14
Type: pfam
Location: 15172 - 16335 (+)
Type: pfam
Location: 15172 - 16335 (+)
Gene ID: MGYG000000288_13_15
Type: pfam
Location: 16491 - 17255 (+)
Type: pfam
Location: 16491 - 17255 (+)
Gene ID: MGYG000000288_13_16
Type: CAZyme
Location: 17270 - 18487 (+)
Type: CAZyme
Location: 17270 - 18487 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902461085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000288_13_9 | vegan > omnivore | 3.35772 | 0.01144 |
| MGYG000000288_13_9 | vegetarian > omnivore | 1.09886 | 0.03145 |
| MGYG000000288_13_10 | vegan > omnivore | 2.81910 | 0.01144 |
| MGYG000000288_13_10 | vegetarian > omnivore | 1.22786 | 0.03145 |
| MGYG000000288_13_11 | vegan > omnivore | 2.98312 | 0.01144 |
| MGYG000000288_13_11 | vegetarian > omnivore | 1.24555 | 0.03145 |
| MGYG000000288_13_12 | vegan > omnivore | 1.29810 | 0.01144 |
| MGYG000000288_13_13 | vegan > omnivore | 2.89981 | 0.01144 |
| MGYG000000288_13_13 | vegetarian > omnivore | 1.03258 | 0.03145 |
| MGYG000000288_13_16 | vegan > omnivore | 1.72147 | 0.01144 |