Cluster: MGYG000000288_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000288
- CGC Family ID: CGCFAM_00880
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000288_2 | MGYG000000288_2_44 | 44347 | 45099 | - | 3.A.1.3.20 |
| TC | MGYG000000288_2 | MGYG000000288_2_45 | 45112 | 46029 | - | 3.A.1.3.16 |
| NULL(UNKNOWN) | MGYG000000288_2 | MGYG000000288_2_46 | 45992 | 46474 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000288_2 | MGYG000000288_2_47 | 46593 | 47453 | - | 3.A.1.3.15 |
| pfam | MGYG000000288_2 | MGYG000000288_2_48 | 47601 | 48467 | - | AP_endonuc_2 |
| CAZyme | MGYG000000288_2 | MGYG000000288_2_49 | 48634 | 49653 | - | GH109 |
Gene ID: MGYG000000288_2_44
Type: TC
Location: 44347 - 45099 (-)
Type: TC
Location: 44347 - 45099 (-)
Gene ID: MGYG000000288_2_45
Type: TC
Location: 45112 - 46029 (-)
Type: TC
Location: 45112 - 46029 (-)
Gene ID: MGYG000000288_2_46
Type:
Location: 45992 - 46474 (-)
Type:
Location: 45992 - 46474 (-)
Gene ID: MGYG000000288_2_47
Type: TC
Location: 46593 - 47453 (-)
Type: TC
Location: 46593 - 47453 (-)
Gene ID: MGYG000000288_2_48
Type: pfam
Location: 47601 - 48467 (-)
Type: pfam
Location: 47601 - 48467 (-)
Gene ID: MGYG000000288_2_49
Type: CAZyme
Location: 48634 - 49653 (-)
Type: CAZyme
Location: 48634 - 49653 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902461085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.