Cluster: HRGMv2_4820_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4820
- CGC Family ID: CGCFAM_05840
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4820_2 | HRGMv2_4820_2_2 | 4477 | 5469 | - | GT2 |
| pfam | HRGMv2_4820_2 | HRGMv2_4820_2_3 | 5473 | 11760 | - | adh_short | ketoacyl-synt | PP-binding | Acyl_transf_1 | Thioesterase | Epimerase | Ketoacyl-synt_C | KR | adh_short_C2 | PS-DH | KAsynt_C_assoc | PKS_DH_N | Beta-ketacyl_N | RhiE-like_linker | CurL-like_PKS_C |
| NULL(UNKNOWN) | HRGMv2_4820_2 | HRGMv2_4820_2_4 | 11858 | 13279 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4820_2 | HRGMv2_4820_2_5 | 13393 | 14160 | + | GT26 |
| CAZyme | HRGMv2_4820_2 | HRGMv2_4820_2_6 | 14096 | 15337 | - | GT4 |
| pfam | HRGMv2_4820_2 | HRGMv2_4820_2_7 | 15503 | 17635 | - | HemolysinCabind | HemolysinCabind | HemolysinCabind | HemolysinCabind | HemolysinCabind | HemolysinCabind | Hint_2 |
| pfam | HRGMv2_4820_2 | HRGMv2_4820_2_8 | 17811 | 19853 | - | HemolysinCabind | HemolysinCabind | HemolysinCabind | HemolysinCabind | HemolysinCabind | HemolysinCabind | Hint_2 |
| TC | HRGMv2_4820_2 | HRGMv2_4820_2_9 | 19995 | 21035 | - | 3.A.1.20.2 |
Gene ID: HRGMv2_4820_2_2
Type: CAZyme
Location: 4477 - 5469 (-)
Type: CAZyme
Location: 4477 - 5469 (-)
Gene ID: HRGMv2_4820_2_3
Type: pfam
Location: 5473 - 11760 (-)
Type: pfam
Location: 5473 - 11760 (-)
Gene ID: HRGMv2_4820_2_4
Type:
Location: 11858 - 13279 (-)
Type:
Location: 11858 - 13279 (-)
Gene ID: HRGMv2_4820_2_5
Type: CAZyme
Location: 13393 - 14160 (+)
Type: CAZyme
Location: 13393 - 14160 (+)
Gene ID: HRGMv2_4820_2_6
Type: CAZyme
Location: 14096 - 15337 (-)
Type: CAZyme
Location: 14096 - 15337 (-)
Gene ID: HRGMv2_4820_2_7
Type: pfam
Location: 15503 - 17635 (-)
Type: pfam
Location: 15503 - 17635 (-)
Gene ID: HRGMv2_4820_2_8
Type: pfam
Location: 17811 - 19853 (-)
Type: pfam
Location: 17811 - 19853 (-)
Gene ID: HRGMv2_4820_2_9
Type: TC
Location: 19995 - 21035 (-)
Type: TC
Location: 19995 - 21035 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Rhodobacteraceae
Genus
Paracoccus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.