PROTEIN: HRGMv2_4820_2_4
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Protein File & Metadata
Source:
HRGMv2_4820_2_4.pdb
Genome ID:
Protein ID:
HRGMv2_4820_2_4
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Protein Sequence
MPAFALMMLL VWPMITAVIF SRMDKQRALV CTILAGYLLM PPMIEIDLPL IPGINKAMIP 60 ALSAALMLFL RRDLPDDVPT APGMGKVVTI LLVMNFTSPM LTTFTNPDTL FDGINVRPNM 120 SITQGMGDTL LVFMQLLPFL LGYRWLSDMR GAELVLRGLV FGILCYTLPM LFELRFSPQT 180 NIIVYGYFQH DFIQTIRYGG YRPIVFLEHP LWVALITMFA FLSAIALARN NKTRQRLLIA 240 LYLGCIVVLC KSAGALIQAL IAAPLVALAR PRMMALVAAL VASVAFAYPT LRATPFSPMQ 300 TILDTAMSIS PERGRSLEFR MMNEEKLLER ALERPLFGWG GWGRPLFYDP YDGRLSSVPD 360 GQWVIWMGAK GIYGYLAQFL LLLVPIWTMM RAIPGGKRTG RNPELVMMGC LSLMLAMNCL 420 DLIPNATQTP VTWLVAGTLL GNARRLRKGV TQTDASPLAQ GILPKKAGLQ TVL 473
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q9I1M9-F1-model_v4 | 4 | 451 | 25 | 457 | 0.6635 |
0.7427 |
| AF-A0A0H3H4H7-F1-model_v4 | 20 | 454 | 9 | 388 | 0.6546 |
0.7483 |
| AF-X8F0V5-F1-model_v4 | 2 | 460 | 22 | 471 | 0.634 |
0.6888 |
| AF-A0A5P3FVF2-F1-model_v4 | 20 | 461 | 10 | 396 | 0.6316 |
0.7433 |
| AF-Q9HUG6-F1-model_v4 | 17 | 453 | 14 | 394 | 0.63 |
0.7308 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A2S058-F1-model_v4 | GH39 | 20 | 450 | 5 | 400 | 0.6501 |
0.7492 |
| AF-A0A517MXC4-F1-model_v4 | GT26 | 3 | 452 | 1 | 450 | 0.5558 |
0.7204 |
| AF-B8IGI7-F1-model_v4 | GH16_7 | 1 | 452 | 1 | 459 | 0.5363 |
0.7202 |
| AF-B8DZR6-F1-model_v4 | GT9 | 17 | 462 | 37 | 560 | 0.529 |
0.7004 |
| AF-D5MJ04-F1-model_v4 | GT9 | 20 | 453 | 23 | 542 | 0.5029 |
0.6804 |
| AF-E6U9X7-F1-model_v4 | GT0 | 20 | 453 | 6 | 426 | 0.5027 |
0.705 |
| AF-M4X4V7-F1-model_v4 | GH39 | 20 | 473 | 18 | 439 | 0.4997 |
0.7204 |
| AF-A0A6G6J4Y8-F1-model_v4 | GH39 | 20 | 455 | 18 | 421 | 0.499 |
0.7474 |
| AF-A0A386XPQ4-F1-model_v4 | GT0 | 20 | 453 | 32 | 453 | 0.497 |
0.703 |
| AF-A0A160T1R3-F1-model_v4 | GH39 | 4 | 457 | 603 | 1044 | 0.4852 |
0.7113 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A2S058 | GH39 | 20 | 450 | 5 | 400 | 0.6501 |
0.7492 |
| A0A517MXC4 | GT26 | 3 | 452 | 1 | 450 | 0.5558 |
0.7204 |
| B8IGI7 | GH16_7 | 1 | 452 | 1 | 459 | 0.5363 |
0.7202 |
| B5YD26 | GT9 | 20 | 462 | 40 | 560 | 0.5276 |
0.7024 |
| I0HYS1 | GH39 | 1 | 450 | 256 | 852 | 0.5072 |
0.6861 |
| D5MJ04 | GT9 | 20 | 453 | 23 | 542 | 0.5029 |
0.6804 |
| M4X4V7 | GH39 | 20 | 473 | 18 | 439 | 0.4997 |
0.7204 |
| A0A160T1R3 | GH39 | 4 | 457 | 603 | 1044 | 0.4852 |
0.7113 |
Structural Homologs - PDB
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-O32270-F1-model_v4 | 2 | 454 | 33 | 485 | 0.6648 |
0.7211 |
| AF-Q02729-F1-model_v4 | 17 | 451 | 5 | 406 | 0.6352 |
0.7281 |
| AF-Q9HUG6-F1-model_v4 | 17 | 453 | 14 | 394 | 0.63 |
0.7308 |
| AF-Q6F7F9-F1-model_v4 | 20 | 450 | 7 | 405 | 0.5675 |
0.7238 |