Cluster: HRGMv2_4807_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4807
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4807_39 | HRGMv2_4807_39_3 | 2005 | 3741 | + | 3.A.1.106.15 |
| NULL(UNKNOWN) | HRGMv2_4807_39 | HRGMv2_4807_39_4 | 3943 | 4623 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4807_39 | HRGMv2_4807_39_5 | 4680 | 5636 | + | Capsule_synth |
| CAZyme | HRGMv2_4807_39 | HRGMv2_4807_39_6 | 5636 | 6559 | + | GT2 |
| pfam | HRGMv2_4807_39 | HRGMv2_4807_39_7 | 6559 | 7647 | + | Pyr_redox | FAD_binding_3 | GLF | NAD_binding_8 |
| CAZyme | HRGMv2_4807_39 | HRGMv2_4807_39_8 | 7655 | 8752 | + | GT4 |
| pfam | HRGMv2_4807_39 | HRGMv2_4807_39_9 | 8715 | 9467 | - | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 |
| CAZyme | HRGMv2_4807_39 | HRGMv2_4807_39_10 | 9464 | 10675 | - | GT4 |
| CAZyme | HRGMv2_4807_39 | HRGMv2_4807_39_11 | 10668 | 11531 | - | GT2 |
| TC | HRGMv2_4807_39 | HRGMv2_4807_39_12 | 11643 | 13370 | + | 3.A.15.2.1 |
| TC | HRGMv2_4807_39 | HRGMv2_4807_39_13 | 13375 | 14625 | + | 3.A.15.2.1 |
| TC | HRGMv2_4807_39 | HRGMv2_4807_39_14 | 14625 | 15488 | + | 3.A.15.2.1 |
Gene ID: HRGMv2_4807_39_3
Type: TC
Location: 2005 - 3741 (+)
Type: TC
Location: 2005 - 3741 (+)
Gene ID: HRGMv2_4807_39_4
Type:
Location: 3943 - 4623 (+)
Type:
Location: 3943 - 4623 (+)
Gene ID: HRGMv2_4807_39_5
Type: pfam
Location: 4680 - 5636 (+)
Type: pfam
Location: 4680 - 5636 (+)
Gene ID: HRGMv2_4807_39_6
Type: CAZyme
Location: 5636 - 6559 (+)
Type: CAZyme
Location: 5636 - 6559 (+)
Gene ID: HRGMv2_4807_39_7
Type: pfam
Location: 6559 - 7647 (+)
Type: pfam
Location: 6559 - 7647 (+)
Gene ID: HRGMv2_4807_39_8
Type: CAZyme
Location: 7655 - 8752 (+)
Type: CAZyme
Location: 7655 - 8752 (+)
Gene ID: HRGMv2_4807_39_9
Type: pfam
Location: 8715 - 9467 (-)
Type: pfam
Location: 8715 - 9467 (-)
Gene ID: HRGMv2_4807_39_10
Type: CAZyme
Location: 9464 - 10675 (-)
Type: CAZyme
Location: 9464 - 10675 (-)
Gene ID: HRGMv2_4807_39_11
Type: CAZyme
Location: 10668 - 11531 (-)
Type: CAZyme
Location: 10668 - 11531 (-)
Gene ID: HRGMv2_4807_39_12
Type: TC
Location: 11643 - 13370 (+)
Type: TC
Location: 11643 - 13370 (+)
Gene ID: HRGMv2_4807_39_13
Type: TC
Location: 13375 - 14625 (+)
Type: TC
Location: 13375 - 14625 (+)
Gene ID: HRGMv2_4807_39_14
Type: TC
Location: 14625 - 15488 (+)
Type: TC
Location: 14625 - 15488 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.