dbCAN Logo

Cluster: HRGMv2_4800_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4800_9 HRGMv2_4800_9_7 8383 9813 - 2.A.6.2.41
pfam HRGMv2_4800_9 HRGMv2_4800_9_8 9810 11381 - MFS_1
TC HRGMv2_4800_9 HRGMv2_4800_9_9 11386 12396 - 3.A.1.105.4
STP HRGMv2_4800_9 HRGMv2_4800_9_10 12393 13040 - TetR_N
CAZyme HRGMv2_4800_9 HRGMv2_4800_9_11 13192 15642 - GH95
NULL(UNKNOWN) HRGMv2_4800_9 HRGMv2_4800_9_12 15896 17089 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4800_9 HRGMv2_4800_9_13 17138 18091 + 2.A.98.1.4
NULL(UNKNOWN) HRGMv2_4800_9 HRGMv2_4800_9_14 18202 18654 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4800_9 HRGMv2_4800_9_15 18798 20222 + HlyD_3 | HlyD_D23
TC HRGMv2_4800_9 HRGMv2_4800_9_16 20245 20937 + 3.A.1.122.15
Gene ID: HRGMv2_4800_9_7
Type: TC
Location: 8383 - 9813 (-)
Gene ID: HRGMv2_4800_9_8
Type: pfam
Location: 9810 - 11381 (-)
Gene ID: HRGMv2_4800_9_9
Type: TC
Location: 11386 - 12396 (-)
Gene ID: HRGMv2_4800_9_10
Type: STP
Location: 12393 - 13040 (-)
Gene ID: HRGMv2_4800_9_11
Type: CAZyme
Location: 13192 - 15642 (-)
Gene ID: HRGMv2_4800_9_12
Type:
Location: 15896 - 17089 (+)
Gene ID: HRGMv2_4800_9_13
Type: TC
Location: 17138 - 18091 (+)
Gene ID: HRGMv2_4800_9_14
Type:
Location: 18202 - 18654 (+)
Gene ID: HRGMv2_4800_9_15
Type: pfam
Location: 18798 - 20222 (+)
Gene ID: HRGMv2_4800_9_16
Type: TC
Location: 20245 - 20937 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List