Cluster: HRGMv2_4800_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4800
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4800_7 | HRGMv2_4800_7_37 | 27472 | 29589 | - | CBM32 | GH29 |
| CAZyme | HRGMv2_4800_7 | HRGMv2_4800_7_38 | 29775 | 31817 | + | GH36 |
| pfam | HRGMv2_4800_7 | HRGMv2_4800_7_39 | 31874 | 32725 | - | EF-hand_5 | EF-hand_5 | EF-hand_5 | EF-hand_7 |
| NULL(UNKNOWN) | HRGMv2_4800_7 | HRGMv2_4800_7_40 | 32722 | 33198 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4800_7 | HRGMv2_4800_7_41 | 33267 | 33695 | - | 3.A.5.1.1 |
| pfam | HRGMv2_4800_7 | HRGMv2_4800_7_42 | 33692 | 34822 | - | TGT |
| pfam | HRGMv2_4800_7 | HRGMv2_4800_7_43 | 34819 | 35424 | - | Methyltransf_4 |
| TC | HRGMv2_4800_7 | HRGMv2_4800_7_44 | 35512 | 36675 | - | 9.B.169.1.8 |
| sulfatase | HRGMv2_4800_7 | HRGMv2_4800_7_45 | 36784 | 38205 | + | S1_17 |
| CAZyme | HRGMv2_4800_7 | HRGMv2_4800_7_46 | 38228 | 40582 | + | GH95 |
| NULL(UNKNOWN) | HRGMv2_4800_7 | HRGMv2_4800_7_47 | 40809 | 41870 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4800_7 | HRGMv2_4800_7_48 | 41882 | 44173 | - | GH89 |
Gene ID: HRGMv2_4800_7_37
Type: CAZyme
Location: 27472 - 29589 (-)
Type: CAZyme
Location: 27472 - 29589 (-)
Gene ID: HRGMv2_4800_7_38
Type: CAZyme
Location: 29775 - 31817 (+)
Type: CAZyme
Location: 29775 - 31817 (+)
Gene ID: HRGMv2_4800_7_39
Type: pfam
Location: 31874 - 32725 (-)
Type: pfam
Location: 31874 - 32725 (-)
Gene ID: HRGMv2_4800_7_40
Type:
Location: 32722 - 33198 (-)
Type:
Location: 32722 - 33198 (-)
Gene ID: HRGMv2_4800_7_41
Type: TC
Location: 33267 - 33695 (-)
Type: TC
Location: 33267 - 33695 (-)
Gene ID: HRGMv2_4800_7_42
Type: pfam
Location: 33692 - 34822 (-)
Type: pfam
Location: 33692 - 34822 (-)
Gene ID: HRGMv2_4800_7_43
Type: pfam
Location: 34819 - 35424 (-)
Type: pfam
Location: 34819 - 35424 (-)
Gene ID: HRGMv2_4800_7_44
Type: TC
Location: 35512 - 36675 (-)
Type: TC
Location: 35512 - 36675 (-)
Gene ID: HRGMv2_4800_7_45
Type: sulfatase
Location: 36784 - 38205 (+)
Type: sulfatase
Location: 36784 - 38205 (+)
Gene ID: HRGMv2_4800_7_46
Type: CAZyme
Location: 38228 - 40582 (+)
Type: CAZyme
Location: 38228 - 40582 (+)
Gene ID: HRGMv2_4800_7_47
Type:
Location: 40809 - 41870 (+)
Type:
Location: 40809 - 41870 (+)
Gene ID: HRGMv2_4800_7_48
Type: CAZyme
Location: 41882 - 44173 (-)
Type: CAZyme
Location: 41882 - 44173 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia glycaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.