Cluster: HRGMv2_4800_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4800
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4800_1 | HRGMv2_4800_1_150 | 161410 | 162411 | - | 2.A.28.3.4 |
| pfam | HRGMv2_4800_1 | HRGMv2_4800_1_151 | 162433 | 163656 | - | tRNA-synt_1b |
| CAZyme | HRGMv2_4800_1 | HRGMv2_4800_1_152 | 163852 | 165624 | + | GH20 |
| CAZyme | HRGMv2_4800_1 | HRGMv2_4800_1_153 | 165641 | 167350 | + | GH20 |
| TC | HRGMv2_4800_1 | HRGMv2_4800_1_154 | 167438 | 170293 | - | 3.A.7.7.1 |
Gene ID: HRGMv2_4800_1_150
Type: TC
Location: 161410 - 162411 (-)
Type: TC
Location: 161410 - 162411 (-)
Gene ID: HRGMv2_4800_1_151
Type: pfam
Location: 162433 - 163656 (-)
Type: pfam
Location: 162433 - 163656 (-)
Gene ID: HRGMv2_4800_1_152
Type: CAZyme
Location: 163852 - 165624 (+)
Type: CAZyme
Location: 163852 - 165624 (+)
Gene ID: HRGMv2_4800_1_153
Type: CAZyme
Location: 165641 - 167350 (+)
Type: CAZyme
Location: 165641 - 167350 (+)
Gene ID: HRGMv2_4800_1_154
Type: TC
Location: 167438 - 170293 (-)
Type: TC
Location: 167438 - 170293 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia glycaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.