Cluster: HRGMv2_4800_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4800
- CGC Family ID: CGCFAM_07205
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_130 | 173371 | 175920 | - | 3.A.12.1.1 |
| NULL(UNKNOWN) | HRGMv2_4800_4 | HRGMv2_4800_4_131 | 176034 | 176738 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4800_4 | HRGMv2_4800_4_132 | 176873 | 177139 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4800_4 | HRGMv2_4800_4_133 | 177264 | 178904 | + | GH20 |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_134 | 179060 | 180142 | + | 3.A.15.2.1 |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_135 | 180170 | 181261 | + | 3.A.15.2.1 |
Gene ID: HRGMv2_4800_4_130
Type: TC
Location: 173371 - 175920 (-)
Type: TC
Location: 173371 - 175920 (-)
Gene ID: HRGMv2_4800_4_131
Type:
Location: 176034 - 176738 (-)
Type:
Location: 176034 - 176738 (-)
Gene ID: HRGMv2_4800_4_132
Type:
Location: 176873 - 177139 (+)
Type:
Location: 176873 - 177139 (+)
Gene ID: HRGMv2_4800_4_133
Type: CAZyme
Location: 177264 - 178904 (+)
Type: CAZyme
Location: 177264 - 178904 (+)
Gene ID: HRGMv2_4800_4_134
Type: TC
Location: 179060 - 180142 (+)
Type: TC
Location: 179060 - 180142 (+)
Gene ID: HRGMv2_4800_4_135
Type: TC
Location: 180170 - 181261 (+)
Type: TC
Location: 180170 - 181261 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia glycaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.