Cluster: HRGMv2_4800_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4800
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_39 | 53771 | 55981 | - | 9.B.174.1.2 |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_40 | 56148 | 59705 | - | 3.A.1.204.4 |
| STP | HRGMv2_4800_4 | HRGMv2_4800_4_41 | 60255 | 61913 | + | SpoIIE |
| pfam | HRGMv2_4800_4 | HRGMv2_4800_4_42 | 62032 | 63315 | + | Arginosuc_synth | Arginosuc_syn_C |
| CAZyme | HRGMv2_4800_4 | HRGMv2_4800_4_43 | 63423 | 64553 | + | GT4 |
| pfam | HRGMv2_4800_4 | HRGMv2_4800_4_44 | 64550 | 65152 | + | Hexapep | Hexapep_2 |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_45 | 65147 | 67285 | - | 9.B.97.5.1 |
| CAZyme | HRGMv2_4800_4 | HRGMv2_4800_4_46 | 67346 | 69067 | - | GH77 |
| TF | HRGMv2_4800_4 | HRGMv2_4800_4_47 | 69241 | 69942 | + | Trans_reg_C |
| STP | HRGMv2_4800_4 | HRGMv2_4800_4_48 | 69945 | 71561 | + | HATPase_c | HisKA |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_49 | 71580 | 72542 | - | 3.A.1.5.22 |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_50 | 72544 | 73467 | - | 3.A.1.5.22 |
| TC | HRGMv2_4800_4 | HRGMv2_4800_4_51 | 73460 | 75142 | - | 3.A.1.5.1 |
Gene ID: HRGMv2_4800_4_39
Type: TC
Location: 53771 - 55981 (-)
Type: TC
Location: 53771 - 55981 (-)
Gene ID: HRGMv2_4800_4_40
Type: TC
Location: 56148 - 59705 (-)
Type: TC
Location: 56148 - 59705 (-)
Gene ID: HRGMv2_4800_4_41
Type: STP
Location: 60255 - 61913 (+)
Type: STP
Location: 60255 - 61913 (+)
Gene ID: HRGMv2_4800_4_42
Type: pfam
Location: 62032 - 63315 (+)
Type: pfam
Location: 62032 - 63315 (+)
Gene ID: HRGMv2_4800_4_43
Type: CAZyme
Location: 63423 - 64553 (+)
Type: CAZyme
Location: 63423 - 64553 (+)
Gene ID: HRGMv2_4800_4_44
Type: pfam
Location: 64550 - 65152 (+)
Type: pfam
Location: 64550 - 65152 (+)
Gene ID: HRGMv2_4800_4_45
Type: TC
Location: 65147 - 67285 (-)
Type: TC
Location: 65147 - 67285 (-)
Gene ID: HRGMv2_4800_4_46
Type: CAZyme
Location: 67346 - 69067 (-)
Type: CAZyme
Location: 67346 - 69067 (-)
Gene ID: HRGMv2_4800_4_47
Type: TF
Location: 69241 - 69942 (+)
Type: TF
Location: 69241 - 69942 (+)
Gene ID: HRGMv2_4800_4_48
Type: STP
Location: 69945 - 71561 (+)
Type: STP
Location: 69945 - 71561 (+)
Gene ID: HRGMv2_4800_4_49
Type: TC
Location: 71580 - 72542 (-)
Type: TC
Location: 71580 - 72542 (-)
Gene ID: HRGMv2_4800_4_50
Type: TC
Location: 72544 - 73467 (-)
Type: TC
Location: 72544 - 73467 (-)
Gene ID: HRGMv2_4800_4_51
Type: TC
Location: 73460 - 75142 (-)
Type: TC
Location: 73460 - 75142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia glycaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.