Cluster: HRGMv2_4775_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4775_41 | HRGMv2_4775_41_2 | 918 | 2066 | + | GT28 |
| pfam | HRGMv2_4775_41 | HRGMv2_4775_41_3 | 2098 | 2580 | + | Colicin_V |
| pfam | HRGMv2_4775_41 | HRGMv2_4775_41_4 | 2580 | 3809 | + | DNA_pol3_delta2 |
| TC | HRGMv2_4775_41 | HRGMv2_4775_41_5 | 3794 | 5020 | + | 2.A.21.9.1 |
Gene ID: HRGMv2_4775_41_2
Type: CAZyme
Location: 918 - 2066 (+)
Type: CAZyme
Location: 918 - 2066 (+)
Gene ID: HRGMv2_4775_41_3
Type: pfam
Location: 2098 - 2580 (+)
Type: pfam
Location: 2098 - 2580 (+)
Gene ID: HRGMv2_4775_41_4
Type: pfam
Location: 2580 - 3809 (+)
Type: pfam
Location: 2580 - 3809 (+)
Gene ID: HRGMv2_4775_41_5
Type: TC
Location: 3794 - 5020 (+)
Type: TC
Location: 3794 - 5020 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.