Cluster: HRGMv2_4775_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4775_20 | HRGMv2_4775_20_1 | 140 | 1480 | - | GH3 |
| pfam | HRGMv2_4775_20 | HRGMv2_4775_20_2 | 1570 | 1995 | + | 4HBT | 4HBT_2 | Acyl-ACP_TE_C |
| TC | HRGMv2_4775_20 | HRGMv2_4775_20_3 | 2012 | 2839 | - | 3.A.1.132.3 |
Gene ID: HRGMv2_4775_20_1
Type: CAZyme
Location: 140 - 1480 (-)
Type: CAZyme
Location: 140 - 1480 (-)
Gene ID: HRGMv2_4775_20_2
Type: pfam
Location: 1570 - 1995 (+)
Type: pfam
Location: 1570 - 1995 (+)
Gene ID: HRGMv2_4775_20_3
Type: TC
Location: 2012 - 2839 (-)
Type: TC
Location: 2012 - 2839 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.