Cluster: HRGMv2_4775_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_19 | HRGMv2_4775_19_5 | 2907 | 4175 | - | 9.B.160.1.10 |
| pfam | HRGMv2_4775_19 | HRGMv2_4775_19_6 | 4194 | 5810 | - | PEGA |
| pfam | HRGMv2_4775_19 | HRGMv2_4775_19_7 | 5832 | 6497 | - | RadC |
| CAZyme | HRGMv2_4775_19 | HRGMv2_4775_19_8 | 6704 | 7294 | + | GH73 |
Gene ID: HRGMv2_4775_19_5
Type: TC
Location: 2907 - 4175 (-)
Type: TC
Location: 2907 - 4175 (-)
Gene ID: HRGMv2_4775_19_6
Type: pfam
Location: 4194 - 5810 (-)
Type: pfam
Location: 4194 - 5810 (-)
Gene ID: HRGMv2_4775_19_7
Type: pfam
Location: 5832 - 6497 (-)
Type: pfam
Location: 5832 - 6497 (-)
Gene ID: HRGMv2_4775_19_8
Type: CAZyme
Location: 6704 - 7294 (+)
Type: CAZyme
Location: 6704 - 7294 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.