Cluster: HRGMv2_4774_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_01618
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4774_24 | HRGMv2_4774_24_4 | 4345 | 6117 | - | GH13_36 |
| TC | HRGMv2_4774_24 | HRGMv2_4774_24_5 | 6365 | 7441 | - | 3.A.1.1.6 |
| TC | HRGMv2_4774_24 | HRGMv2_4774_24_6 | 7438 | 9558 | - | 3.A.1.1.6 |
| TC | HRGMv2_4774_24 | HRGMv2_4774_24_7 | 9667 | 10845 | - | 3.A.1.1.16 |
| CAZyme | HRGMv2_4774_24 | HRGMv2_4774_24_8 | 10914 | 13637 | - | GH13_14 |
Gene ID: HRGMv2_4774_24_4
Type: CAZyme
Location: 4345 - 6117 (-)
Type: CAZyme
Location: 4345 - 6117 (-)
Gene ID: HRGMv2_4774_24_5
Type: TC
Location: 6365 - 7441 (-)
Type: TC
Location: 6365 - 7441 (-)
Gene ID: HRGMv2_4774_24_6
Type: TC
Location: 7438 - 9558 (-)
Type: TC
Location: 7438 - 9558 (-)
Gene ID: HRGMv2_4774_24_7
Type: TC
Location: 9667 - 10845 (-)
Type: TC
Location: 9667 - 10845 (-)
Gene ID: HRGMv2_4774_24_8
Type: CAZyme
Location: 10914 - 13637 (-)
Type: CAZyme
Location: 10914 - 13637 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.