Cluster: HRGMv2_4774_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_02819
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4774_11 | HRGMv2_4774_11_4 | 6308 | 7735 | + | GH13_28 |
| pfam | HRGMv2_4774_11 | HRGMv2_4774_11_5 | 7732 | 8916 | - | IspD | YgbB | NTP_transf_3 |
| pfam | HRGMv2_4774_11 | HRGMv2_4774_11_6 | 8906 | 9592 | - | CarD_TRCF_RID | CarD_C |
| TC | HRGMv2_4774_11 | HRGMv2_4774_11_7 | 9777 | 11879 | + | 1.I.1.1.3 |
| pfam | HRGMv2_4774_11 | HRGMv2_4774_11_8 | 11969 | 13417 | - | NFACT-R_1 | NFACT_N | NFACT_N |
| NULL(UNKNOWN) | HRGMv2_4774_11 | HRGMv2_4774_11_9 | 13587 | 13796 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4774_11 | HRGMv2_4774_11_10 | 13799 | 15889 | + | 3.A.3.32.5 |
Gene ID: HRGMv2_4774_11_4
Type: CAZyme
Location: 6308 - 7735 (+)
Type: CAZyme
Location: 6308 - 7735 (+)
Gene ID: HRGMv2_4774_11_5
Type: pfam
Location: 7732 - 8916 (-)
Type: pfam
Location: 7732 - 8916 (-)
Gene ID: HRGMv2_4774_11_6
Type: pfam
Location: 8906 - 9592 (-)
Type: pfam
Location: 8906 - 9592 (-)
Gene ID: HRGMv2_4774_11_7
Type: TC
Location: 9777 - 11879 (+)
Type: TC
Location: 9777 - 11879 (+)
Gene ID: HRGMv2_4774_11_8
Type: pfam
Location: 11969 - 13417 (-)
Type: pfam
Location: 11969 - 13417 (-)
Gene ID: HRGMv2_4774_11_9
Type:
Location: 13587 - 13796 (+)
Type:
Location: 13587 - 13796 (+)
Gene ID: HRGMv2_4774_11_10
Type: TC
Location: 13799 - 15889 (+)
Type: TC
Location: 13799 - 15889 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.