Cluster: HRGMv2_4774_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_04113
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4774_87 | HRGMv2_4774_87_5 | 3173 | 5236 | + | GH13_36 |
| NULL(UNKNOWN) | HRGMv2_4774_87 | HRGMv2_4774_87_6 | 5331 | 5570 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4774_87 | HRGMv2_4774_87_7 | 5585 | 6169 | + | Acetyltransf_1 |
| TC | HRGMv2_4774_87 | HRGMv2_4774_87_8 | 6288 | 7565 | + | 3.A.1.1.44 |
Gene ID: HRGMv2_4774_87_5
Type: CAZyme
Location: 3173 - 5236 (+)
Type: CAZyme
Location: 3173 - 5236 (+)
Gene ID: HRGMv2_4774_87_6
Type:
Location: 5331 - 5570 (+)
Type:
Location: 5331 - 5570 (+)
Gene ID: HRGMv2_4774_87_7
Type: pfam
Location: 5585 - 6169 (+)
Type: pfam
Location: 5585 - 6169 (+)
Gene ID: HRGMv2_4774_87_8
Type: TC
Location: 6288 - 7565 (+)
Type: TC
Location: 6288 - 7565 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.