Cluster: HRGMv2_4774_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_01145
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4774_63 | HRGMv2_4774_63_9 | 7191 | 8429 | - | 2.A.21.9.1 |
| pfam | HRGMv2_4774_63 | HRGMv2_4774_63_10 | 8414 | 9643 | - | DNA_pol3_delta2 |
| TC | HRGMv2_4774_63 | HRGMv2_4774_63_11 | 9643 | 10125 | - | 9.B.160.1.11 |
| CAZyme | HRGMv2_4774_63 | HRGMv2_4774_63_12 | 10153 | 11310 | - | GT28 |
Gene ID: HRGMv2_4774_63_9
Type: TC
Location: 7191 - 8429 (-)
Type: TC
Location: 7191 - 8429 (-)
Gene ID: HRGMv2_4774_63_10
Type: pfam
Location: 8414 - 9643 (-)
Type: pfam
Location: 8414 - 9643 (-)
Gene ID: HRGMv2_4774_63_11
Type: TC
Location: 9643 - 10125 (-)
Type: TC
Location: 9643 - 10125 (-)
Gene ID: HRGMv2_4774_63_12
Type: CAZyme
Location: 10153 - 11310 (-)
Type: CAZyme
Location: 10153 - 11310 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.