Cluster: HRGMv2_4774_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4774_62 | HRGMv2_4774_62_2 | 2270 | 3376 | + | 3.A.1.5.29 |
| TC | HRGMv2_4774_62 | HRGMv2_4774_62_3 | 3383 | 5350 | + | 3.A.1.5.29 |
| CAZyme | HRGMv2_4774_62 | HRGMv2_4774_62_4 | 5623 | 7215 | + | GH77 |
Gene ID: HRGMv2_4774_62_2
Type: TC
Location: 2270 - 3376 (+)
Type: TC
Location: 2270 - 3376 (+)
Gene ID: HRGMv2_4774_62_3
Type: TC
Location: 3383 - 5350 (+)
Type: TC
Location: 3383 - 5350 (+)
Gene ID: HRGMv2_4774_62_4
Type: CAZyme
Location: 5623 - 7215 (+)
Type: CAZyme
Location: 5623 - 7215 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.