Cluster: HRGMv2_4774_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_10678
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4774_52 | HRGMv2_4774_52_3 | 3499 | 6723 | + | GH13_2 |
| NULL(UNKNOWN) | HRGMv2_4774_52 | HRGMv2_4774_52_4 | 7033 | 7284 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4774_52 | HRGMv2_4774_52_5 | 7421 | 8566 | + | 3.A.1.4.10 |
| peptidase | HRGMv2_4774_52 | HRGMv2_4774_52_6 | 8704 | 12675 | + | C56.972 |
| NULL(UNKNOWN) | HRGMv2_4774_52 | HRGMv2_4774_52_7 | 12717 | 13736 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4774_52 | HRGMv2_4774_52_8 | 13749 | 15014 | + | 9.A.40.2.1 |
| TC | HRGMv2_4774_52 | HRGMv2_4774_52_9 | 15011 | 16309 | + | 9.A.40.2.4 |
Gene ID: HRGMv2_4774_52_3
Type: CAZyme
Location: 3499 - 6723 (+)
Type: CAZyme
Location: 3499 - 6723 (+)
Gene ID: HRGMv2_4774_52_4
Type:
Location: 7033 - 7284 (+)
Type:
Location: 7033 - 7284 (+)
Gene ID: HRGMv2_4774_52_5
Type: TC
Location: 7421 - 8566 (+)
Type: TC
Location: 7421 - 8566 (+)
Gene ID: HRGMv2_4774_52_6
Type: peptidase
Location: 8704 - 12675 (+)
Type: peptidase
Location: 8704 - 12675 (+)
Gene ID: HRGMv2_4774_52_7
Type:
Location: 12717 - 13736 (+)
Type:
Location: 12717 - 13736 (+)
Gene ID: HRGMv2_4774_52_8
Type: TC
Location: 13749 - 15014 (+)
Type: TC
Location: 13749 - 15014 (+)
Gene ID: HRGMv2_4774_52_9
Type: TC
Location: 15011 - 16309 (+)
Type: TC
Location: 15011 - 16309 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.