Cluster: HRGMv2_4774_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_00423
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4774_48 | HRGMv2_4774_48_11 | 11967 | 13106 | - | 1.I.1.1.3 |
| CAZyme | HRGMv2_4774_48 | HRGMv2_4774_48_12 | 13154 | 14272 | + | GT4 |
| TC | HRGMv2_4774_48 | HRGMv2_4774_48_13 | 14319 | 15596 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_4774_48_11
Type: TC
Location: 11967 - 13106 (-)
Type: TC
Location: 11967 - 13106 (-)
Gene ID: HRGMv2_4774_48_12
Type: CAZyme
Location: 13154 - 14272 (+)
Type: CAZyme
Location: 13154 - 14272 (+)
Gene ID: HRGMv2_4774_48_13
Type: TC
Location: 14319 - 15596 (-)
Type: TC
Location: 14319 - 15596 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.