Cluster: HRGMv2_4774_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_00040
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4774_36 | HRGMv2_4774_36_12 | 17974 | 19083 | + | GT4 |
| TC | HRGMv2_4774_36 | HRGMv2_4774_36_13 | 19087 | 20547 | + | 2.A.66.2.16 |
| CAZyme | HRGMv2_4774_36 | HRGMv2_4774_36_14 | 20553 | 21449 | + | GT17 |
Gene ID: HRGMv2_4774_36_12
Type: CAZyme
Location: 17974 - 19083 (+)
Type: CAZyme
Location: 17974 - 19083 (+)
Gene ID: HRGMv2_4774_36_13
Type: TC
Location: 19087 - 20547 (+)
Type: TC
Location: 19087 - 20547 (+)
Gene ID: HRGMv2_4774_36_14
Type: CAZyme
Location: 20553 - 21449 (+)
Type: CAZyme
Location: 20553 - 21449 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.