Cluster: HRGMv2_4774_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4774
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4774_33 | HRGMv2_4774_33_12 | 11775 | 13640 | - | 1.B.52.2.1 |
| pfam | HRGMv2_4774_33 | HRGMv2_4774_33_13 | 13912 | 14709 | + | Acyltransferase |
| CAZyme | HRGMv2_4774_33 | HRGMv2_4774_33_14 | 14797 | 15633 | + | GT8 |
| CAZyme | HRGMv2_4774_33 | HRGMv2_4774_33_15 | 15626 | 17440 | + | GT8 |
Gene ID: HRGMv2_4774_33_12
Type: TC
Location: 11775 - 13640 (-)
Type: TC
Location: 11775 - 13640 (-)
Gene ID: HRGMv2_4774_33_13
Type: pfam
Location: 13912 - 14709 (+)
Type: pfam
Location: 13912 - 14709 (+)
Gene ID: HRGMv2_4774_33_14
Type: CAZyme
Location: 14797 - 15633 (+)
Type: CAZyme
Location: 14797 - 15633 (+)
Gene ID: HRGMv2_4774_33_15
Type: CAZyme
Location: 15626 - 17440 (+)
Type: CAZyme
Location: 15626 - 17440 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.