Cluster: HRGMv2_4774_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4774_27 | HRGMv2_4774_27_26 | 25093 | 25929 | + | 3.A.1.132.3 |
| pfam | HRGMv2_4774_27 | HRGMv2_4774_27_27 | 25926 | 26327 | - | 4HBT | 4HBT_2 | Acyl-ACP_TE_C |
| CAZyme | HRGMv2_4774_27 | HRGMv2_4774_27_28 | 26447 | 27721 | + | GH3 |
Gene ID: HRGMv2_4774_27_26
Type: TC
Location: 25093 - 25929 (+)
Type: TC
Location: 25093 - 25929 (+)
Gene ID: HRGMv2_4774_27_27
Type: pfam
Location: 25926 - 26327 (-)
Type: pfam
Location: 25926 - 26327 (-)
Gene ID: HRGMv2_4774_27_28
Type: CAZyme
Location: 26447 - 27721 (+)
Type: CAZyme
Location: 26447 - 27721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.