Cluster: HRGMv2_4774_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4774
- CGC Family ID: CGCFAM_10677
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4774_1 | HRGMv2_4774_1_54 | 61926 | 65189 | - | 9.B.34.1.4 |
| TC | HRGMv2_4774_1 | HRGMv2_4774_1_55 | 65297 | 66634 | - | 9.B.1.1.2 |
| TF | HRGMv2_4774_1 | HRGMv2_4774_1_56 | 66729 | 68153 | + | GntR |
| CAZyme | HRGMv2_4774_1 | HRGMv2_4774_1_57 | 68129 | 69286 | - | GT104 |
| TC | HRGMv2_4774_1 | HRGMv2_4774_1_58 | 69283 | 70083 | - | 9.B.10.1.1 |
Gene ID: HRGMv2_4774_1_54
Type: TC
Location: 61926 - 65189 (-)
Type: TC
Location: 61926 - 65189 (-)
Gene ID: HRGMv2_4774_1_55
Type: TC
Location: 65297 - 66634 (-)
Type: TC
Location: 65297 - 66634 (-)
Gene ID: HRGMv2_4774_1_56
Type: TF
Location: 66729 - 68153 (+)
Type: TF
Location: 66729 - 68153 (+)
Gene ID: HRGMv2_4774_1_57
Type: CAZyme
Location: 68129 - 69286 (-)
Type: CAZyme
Location: 68129 - 69286 (-)
Gene ID: HRGMv2_4774_1_58
Type: TC
Location: 69283 - 70083 (-)
Type: TC
Location: 69283 - 70083 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp002437725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.