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Cluster: HRGMv2_4752_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4752_6 HRGMv2_4752_6_67 66221 68941 + 3.A.3.2.21
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_68 69053 69913 + CE4
pfam HRGMv2_4752_6 HRGMv2_4752_6_69 70117 70848 - Acyl-ACP_TE | Acyl-ACP_TE_C
TC HRGMv2_4752_6 HRGMv2_4752_6_70 71025 72887 + 4.C.1.1.4
pfam HRGMv2_4752_6 HRGMv2_4752_6_71 73020 73490 + Alg14
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_72 73490 75043 + GT4
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_73 75057 76001 + GT2
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_74 76015 76974 + GT2
pfam HRGMv2_4752_6 HRGMv2_4752_6_75 76983 78410 + O-antigen_lig
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_76 78412 79542 + GT4
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_77 79544 80434 + GT2
NULL(UNKNOWN) HRGMv2_4752_6 HRGMv2_4752_6_78 80678 82405 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4752_6 HRGMv2_4752_6_79 82433 83278 + UbiA
TC HRGMv2_4752_6 HRGMv2_4752_6_80 83322 84068 + 3.A.1.103.4
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_81 84094 86376 + GT2 | GT4
TC HRGMv2_4752_6 HRGMv2_4752_6_82 86384 87157 + 3.A.1.103.4
pfam HRGMv2_4752_6 HRGMv2_4752_6_83 87173 88696 + DUF6056
CAZyme HRGMv2_4752_6 HRGMv2_4752_6_84 88719 89654 + GT2
Gene ID: HRGMv2_4752_6_67
Type: TC
Location: 66221 - 68941 (+)
Gene ID: HRGMv2_4752_6_68
Type: CAZyme
Location: 69053 - 69913 (+)
Gene ID: HRGMv2_4752_6_69
Type: pfam
Location: 70117 - 70848 (-)
Gene ID: HRGMv2_4752_6_70
Type: TC
Location: 71025 - 72887 (+)
Gene ID: HRGMv2_4752_6_71
Type: pfam
Location: 73020 - 73490 (+)
Gene ID: HRGMv2_4752_6_72
Type: CAZyme
Location: 73490 - 75043 (+)
Gene ID: HRGMv2_4752_6_73
Type: CAZyme
Location: 75057 - 76001 (+)
Gene ID: HRGMv2_4752_6_74
Type: CAZyme
Location: 76015 - 76974 (+)
Gene ID: HRGMv2_4752_6_75
Type: pfam
Location: 76983 - 78410 (+)
Gene ID: HRGMv2_4752_6_76
Type: CAZyme
Location: 78412 - 79542 (+)
Gene ID: HRGMv2_4752_6_77
Type: CAZyme
Location: 79544 - 80434 (+)
Gene ID: HRGMv2_4752_6_78
Type:
Location: 80678 - 82405 (+)
Gene ID: HRGMv2_4752_6_79
Type: pfam
Location: 82433 - 83278 (+)
Gene ID: HRGMv2_4752_6_80
Type: TC
Location: 83322 - 84068 (+)
Gene ID: HRGMv2_4752_6_81
Type: CAZyme
Location: 84094 - 86376 (+)
Gene ID: HRGMv2_4752_6_82
Type: TC
Location: 86384 - 87157 (+)
Gene ID: HRGMv2_4752_6_83
Type: pfam
Location: 87173 - 88696 (+)
Gene ID: HRGMv2_4752_6_84
Type: CAZyme
Location: 88719 - 89654 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
Merdicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4752_6_71 vegan > omnivore 2.64282 0.04840

🧭 Explore Read Mapping of CGC

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