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Cluster: HRGMv2_4709_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4709_2 HRGMv2_4709_2_155 182769 184199 + GH1
TF HRGMv2_4709_2 HRGMv2_4709_2_156 184308 187094 + 0037767
TC HRGMv2_4709_2 HRGMv2_4709_2_157 187462 187893 + 4.A.6.1.1
TC HRGMv2_4709_2 HRGMv2_4709_2_158 187951 188433 + 4.A.6.1.1
TC HRGMv2_4709_2 HRGMv2_4709_2_159 188572 189384 + 4.A.6.1.1
TC HRGMv2_4709_2 HRGMv2_4709_2_160 189406 190230 + 4.A.6.1.1
pfam HRGMv2_4709_2 HRGMv2_4709_2_161 190414 191379 + PFK
TC HRGMv2_4709_2 HRGMv2_4709_2_162 191509 193182 + 9.B.34.1.2
TC HRGMv2_4709_2 HRGMv2_4709_2_163 193188 194876 + 9.B.34.1.3
pfam HRGMv2_4709_2 HRGMv2_4709_2_164 194956 196230 - Orn_DAP_Arg_deC | Orn_Arg_deC_N
pfam HRGMv2_4709_2 HRGMv2_4709_2_165 196470 196838 + DUF1232
TC HRGMv2_4709_2 HRGMv2_4709_2_166 196854 199052 + 3.A.7.7.1
TC HRGMv2_4709_2 HRGMv2_4709_2_167 199092 200231 + 1.I.1.1.3
TC HRGMv2_4709_2 HRGMv2_4709_2_168 200312 201643 + 9.A.40.2.1
STP HRGMv2_4709_2 HRGMv2_4709_2_169 201682 202824 + GGDEF
NULL(UNKNOWN) HRGMv2_4709_2 HRGMv2_4709_2_170 202911 204119 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4709_2 HRGMv2_4709_2_171 204240 206159 + 3.A.1.120.6
Gene ID: HRGMv2_4709_2_155
Type: CAZyme
Location: 182769 - 184199 (+)
Gene ID: HRGMv2_4709_2_156
Type: TF
Location: 184308 - 187094 (+)
Gene ID: HRGMv2_4709_2_157
Type: TC
Location: 187462 - 187893 (+)
Gene ID: HRGMv2_4709_2_158
Type: TC
Location: 187951 - 188433 (+)
Gene ID: HRGMv2_4709_2_159
Type: TC
Location: 188572 - 189384 (+)
Gene ID: HRGMv2_4709_2_160
Type: TC
Location: 189406 - 190230 (+)
Gene ID: HRGMv2_4709_2_161
Type: pfam
Location: 190414 - 191379 (+)
Gene ID: HRGMv2_4709_2_162
Type: TC
Location: 191509 - 193182 (+)
Gene ID: HRGMv2_4709_2_163
Type: TC
Location: 193188 - 194876 (+)
Gene ID: HRGMv2_4709_2_164
Type: pfam
Location: 194956 - 196230 (-)
Gene ID: HRGMv2_4709_2_165
Type: pfam
Location: 196470 - 196838 (+)
Gene ID: HRGMv2_4709_2_166
Type: TC
Location: 196854 - 199052 (+)
Gene ID: HRGMv2_4709_2_167
Type: TC
Location: 199092 - 200231 (+)
Gene ID: HRGMv2_4709_2_168
Type: TC
Location: 200312 - 201643 (+)
Gene ID: HRGMv2_4709_2_169
Type: STP
Location: 201682 - 202824 (+)
Gene ID: HRGMv2_4709_2_170
Type:
Location: 202911 - 204119 (+)
Gene ID: HRGMv2_4709_2_171
Type: TC
Location: 204240 - 206159 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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