Cluster: HRGMv2_4697_CGC52
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4697
- CGC Family ID: CGCFAM_10669
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4697_24 | HRGMv2_4697_24_18 | 17306 | 18805 | + | 1.B.52.2.1 |
| pfam | HRGMv2_4697_24 | HRGMv2_4697_24_19 | 18974 | 19456 | - | SmpB |
| pfam | HRGMv2_4697_24 | HRGMv2_4697_24_20 | 19618 | 20502 | - | DHDPS |
| CAZyme | HRGMv2_4697_24 | HRGMv2_4697_24_21 | 20853 | 22937 | + | GH23 |
| TC | HRGMv2_4697_24 | HRGMv2_4697_24_22 | 23106 | 24197 | - | 1.B.70.1.11 |
| TC | HRGMv2_4697_24 | HRGMv2_4697_24_23 | 24708 | 25802 | - | 1.B.70.1.11 |
Gene ID: HRGMv2_4697_24_18
Type: TC
Location: 17306 - 18805 (+)
Type: TC
Location: 17306 - 18805 (+)
Gene ID: HRGMv2_4697_24_19
Type: pfam
Location: 18974 - 19456 (-)
Type: pfam
Location: 18974 - 19456 (-)
Gene ID: HRGMv2_4697_24_20
Type: pfam
Location: 19618 - 20502 (-)
Type: pfam
Location: 19618 - 20502 (-)
Gene ID: HRGMv2_4697_24_21
Type: CAZyme
Location: 20853 - 22937 (+)
Type: CAZyme
Location: 20853 - 22937 (+)
Gene ID: HRGMv2_4697_24_22
Type: TC
Location: 23106 - 24197 (-)
Type: TC
Location: 23106 - 24197 (-)
Gene ID: HRGMv2_4697_24_23
Type: TC
Location: 24708 - 25802 (-)
Type: TC
Location: 24708 - 25802 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Species
Agrobacterium pusense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.