Cluster: HRGMv2_4697_CGC39
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4697
- CGC Family ID: CGCFAM_01299
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4697_11 | HRGMv2_4697_11_184 | 179230 | 180318 | + | 3.A.1.1.11 |
| TC | HRGMv2_4697_11 | HRGMv2_4697_11_185 | 180315 | 181196 | + | 3.A.1.1.20 |
| NULL(UNKNOWN) | HRGMv2_4697_11 | HRGMv2_4697_11_186 | 181281 | 182579 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4697_11 | HRGMv2_4697_11_187 | 182675 | 184639 | - | GT2 |
Gene ID: HRGMv2_4697_11_184
Type: TC
Location: 179230 - 180318 (+)
Type: TC
Location: 179230 - 180318 (+)
Gene ID: HRGMv2_4697_11_185
Type: TC
Location: 180315 - 181196 (+)
Type: TC
Location: 180315 - 181196 (+)
Gene ID: HRGMv2_4697_11_186
Type:
Location: 181281 - 182579 (-)
Type:
Location: 181281 - 182579 (-)
Gene ID: HRGMv2_4697_11_187
Type: CAZyme
Location: 182675 - 184639 (-)
Type: CAZyme
Location: 182675 - 184639 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Species
Agrobacterium pusense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.