Cluster: HRGMv2_4697_CGC34
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4697
- CGC Family ID: CGCFAM_00033
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4697_9 | HRGMv2_4697_9_32 | 26588 | 27550 | + | GT2 |
| TC | HRGMv2_4697_9 | HRGMv2_4697_9_33 | 27588 | 29060 | - | 2.A.66.2.23 |
| CAZyme | HRGMv2_4697_9 | HRGMv2_4697_9_34 | 29134 | 30357 | - | GT4 |
| pfam | HRGMv2_4697_9 | HRGMv2_4697_9_35 | 30674 | 31795 | + | Acyl_transf_3 |
| NULL(UNKNOWN) | HRGMv2_4697_9 | HRGMv2_4697_9_36 | 31842 | 33170 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4697_9 | HRGMv2_4697_9_37 | 33275 | 34327 | - | 9.B.97.4.1 |
| NULL(UNKNOWN) | HRGMv2_4697_9 | HRGMv2_4697_9_38 | 34757 | 35614 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4697_9 | HRGMv2_4697_9_39 | 35721 | 38006 | + | 8.A.3.1.1 |
| NULL(UNKNOWN) | HRGMv2_4697_9 | HRGMv2_4697_9_40 | 38017 | 38676 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4697_9 | HRGMv2_4697_9_41 | 38750 | 40279 | + | Wzy_C |
| CAZyme | HRGMv2_4697_9 | HRGMv2_4697_9_42 | 40282 | 41487 | + | GT4 |
| CAZyme | HRGMv2_4697_9 | HRGMv2_4697_9_43 | 41488 | 42582 | - | GT4 |
| CAZyme | HRGMv2_4697_9 | HRGMv2_4697_9_44 | 42638 | 43786 | - | GT4 |
Gene ID: HRGMv2_4697_9_32
Type: CAZyme
Location: 26588 - 27550 (+)
Type: CAZyme
Location: 26588 - 27550 (+)
Gene ID: HRGMv2_4697_9_33
Type: TC
Location: 27588 - 29060 (-)
Type: TC
Location: 27588 - 29060 (-)
Gene ID: HRGMv2_4697_9_34
Type: CAZyme
Location: 29134 - 30357 (-)
Type: CAZyme
Location: 29134 - 30357 (-)
Gene ID: HRGMv2_4697_9_35
Type: pfam
Location: 30674 - 31795 (+)
Type: pfam
Location: 30674 - 31795 (+)
Gene ID: HRGMv2_4697_9_36
Type:
Location: 31842 - 33170 (+)
Type:
Location: 31842 - 33170 (+)
Gene ID: HRGMv2_4697_9_37
Type: TC
Location: 33275 - 34327 (-)
Type: TC
Location: 33275 - 34327 (-)
Gene ID: HRGMv2_4697_9_38
Type:
Location: 34757 - 35614 (+)
Type:
Location: 34757 - 35614 (+)
Gene ID: HRGMv2_4697_9_39
Type: TC
Location: 35721 - 38006 (+)
Type: TC
Location: 35721 - 38006 (+)
Gene ID: HRGMv2_4697_9_40
Type:
Location: 38017 - 38676 (+)
Type:
Location: 38017 - 38676 (+)
Gene ID: HRGMv2_4697_9_41
Type: pfam
Location: 38750 - 40279 (+)
Type: pfam
Location: 38750 - 40279 (+)
Gene ID: HRGMv2_4697_9_42
Type: CAZyme
Location: 40282 - 41487 (+)
Type: CAZyme
Location: 40282 - 41487 (+)
Gene ID: HRGMv2_4697_9_43
Type: CAZyme
Location: 41488 - 42582 (-)
Type: CAZyme
Location: 41488 - 42582 (-)
Gene ID: HRGMv2_4697_9_44
Type: CAZyme
Location: 42638 - 43786 (-)
Type: CAZyme
Location: 42638 - 43786 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Species
Agrobacterium pusense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.