Cluster: HRGMv2_4697_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4697
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4697_5 | HRGMv2_4697_5_114 | 142356 | 143735 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_4697_5 | HRGMv2_4697_5_115 | 143879 | 144046 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4697_5 | HRGMv2_4697_5_116 | 144102 | 144731 | + | Nitroreductase |
| TC | HRGMv2_4697_5 | HRGMv2_4697_5_117 | 145024 | 146139 | + | 3.A.1.24.5 |
| TC | HRGMv2_4697_5 | HRGMv2_4697_5_118 | 146129 | 146797 | + | 3.A.1.24.5 |
| TC | HRGMv2_4697_5 | HRGMv2_4697_5_119 | 146831 | 147610 | + | 3.A.1.24.5 |
| TC | HRGMv2_4697_5 | HRGMv2_4697_5_120 | 147845 | 150049 | + | 9.B.34.1.3 |
Gene ID: HRGMv2_4697_5_114
Type: CAZyme
Location: 142356 - 143735 (+)
Type: CAZyme
Location: 142356 - 143735 (+)
Gene ID: HRGMv2_4697_5_115
Type:
Location: 143879 - 144046 (+)
Type:
Location: 143879 - 144046 (+)
Gene ID: HRGMv2_4697_5_116
Type: STP
Location: 144102 - 144731 (+)
Type: STP
Location: 144102 - 144731 (+)
Gene ID: HRGMv2_4697_5_117
Type: TC
Location: 145024 - 146139 (+)
Type: TC
Location: 145024 - 146139 (+)
Gene ID: HRGMv2_4697_5_118
Type: TC
Location: 146129 - 146797 (+)
Type: TC
Location: 146129 - 146797 (+)
Gene ID: HRGMv2_4697_5_119
Type: TC
Location: 146831 - 147610 (+)
Type: TC
Location: 146831 - 147610 (+)
Gene ID: HRGMv2_4697_5_120
Type: TC
Location: 147845 - 150049 (+)
Type: TC
Location: 147845 - 150049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Species
Agrobacterium pusense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.