Cluster: HRGMv2_4697_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4697
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4697_3 | HRGMv2_4697_3_331 | 366280 | 368010 | + | 3.B.1.1.1 |
| CAZyme | HRGMv2_4697_3 | HRGMv2_4697_3_332 | 368122 | 369609 | + | GH13_5 |
| TF | HRGMv2_4697_3 | HRGMv2_4697_3_333 | 369640 | 370095 | - | MerR |
| TC | HRGMv2_4697_3 | HRGMv2_4697_3_334 | 370252 | 372357 | - | 1.B.14.1.4 |
Gene ID: HRGMv2_4697_3_331
Type: TC
Location: 366280 - 368010 (+)
Type: TC
Location: 366280 - 368010 (+)
Gene ID: HRGMv2_4697_3_332
Type: CAZyme
Location: 368122 - 369609 (+)
Type: CAZyme
Location: 368122 - 369609 (+)
Gene ID: HRGMv2_4697_3_333
Type: TF
Location: 369640 - 370095 (-)
Type: TF
Location: 369640 - 370095 (-)
Gene ID: HRGMv2_4697_3_334
Type: TC
Location: 370252 - 372357 (-)
Type: TC
Location: 370252 - 372357 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Species
Agrobacterium pusense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.