Cluster: HRGMv2_4650_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4650
- CGC Family ID: CGCFAM_02201
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4650_11 | HRGMv2_4650_11_11 | 8382 | 9110 | - | 3.A.1.132.3 |
| TC | HRGMv2_4650_11 | HRGMv2_4650_11_12 | 9088 | 9837 | - | 3.A.1.132.1 |
| TC | HRGMv2_4650_11 | HRGMv2_4650_11_13 | 9997 | 10482 | + | 3.A.1.27.3 |
| pfam | HRGMv2_4650_11 | HRGMv2_4650_11_14 | 10517 | 10981 | + | MlaD |
| pfam | HRGMv2_4650_11 | HRGMv2_4650_11_15 | 10959 | 12008 | + | DUF2155 |
| CAZyme | HRGMv2_4650_11 | HRGMv2_4650_11_16 | 12022 | 12978 | + | GT2 |
Gene ID: HRGMv2_4650_11_11
Type: TC
Location: 8382 - 9110 (-)
Type: TC
Location: 8382 - 9110 (-)
Gene ID: HRGMv2_4650_11_12
Type: TC
Location: 9088 - 9837 (-)
Type: TC
Location: 9088 - 9837 (-)
Gene ID: HRGMv2_4650_11_13
Type: TC
Location: 9997 - 10482 (+)
Type: TC
Location: 9997 - 10482 (+)
Gene ID: HRGMv2_4650_11_14
Type: pfam
Location: 10517 - 10981 (+)
Type: pfam
Location: 10517 - 10981 (+)
Gene ID: HRGMv2_4650_11_15
Type: pfam
Location: 10959 - 12008 (+)
Type: pfam
Location: 10959 - 12008 (+)
Gene ID: HRGMv2_4650_11_16
Type: CAZyme
Location: 12022 - 12978 (+)
Type: CAZyme
Location: 12022 - 12978 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp900762585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.