Cluster: HRGMv2_4639_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_11 | HRGMv2_4639_11_16 | 13788 | 14858 | - | GT28 |
| TC | HRGMv2_4639_11 | HRGMv2_4639_11_17 | 14848 | 16050 | - | 2.A.103.1.1 |
| pfam | HRGMv2_4639_11 | HRGMv2_4639_11_18 | 16047 | 17390 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_4639_11 | HRGMv2_4639_11_19 | 17396 | 18478 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_4639_11_16
Type: CAZyme
Location: 13788 - 14858 (-)
Type: CAZyme
Location: 13788 - 14858 (-)
Gene ID: HRGMv2_4639_11_17
Type: TC
Location: 14848 - 16050 (-)
Type: TC
Location: 14848 - 16050 (-)
Gene ID: HRGMv2_4639_11_18
Type: pfam
Location: 16047 - 17390 (-)
Type: pfam
Location: 16047 - 17390 (-)
Gene ID: HRGMv2_4639_11_19
Type: TC
Location: 17396 - 18478 (-)
Type: TC
Location: 17396 - 18478 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.