Cluster: HRGMv2_4639_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_01441
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_10 | HRGMv2_4639_10_4 | 2914 | 3945 | + | CBM50 |
| pfam | HRGMv2_4639_10 | HRGMv2_4639_10_5 | 3997 | 5082 | + | DNA_processg_A | DprA_WH |
| pfam | HRGMv2_4639_10 | HRGMv2_4639_10_6 | 5147 | 5701 | + | Sua5_yciO_yrdC |
| TC | HRGMv2_4639_10 | HRGMv2_4639_10_7 | 5703 | 9086 | - | 2.A.21.9.1 |
Gene ID: HRGMv2_4639_10_4
Type: CAZyme
Location: 2914 - 3945 (+)
Type: CAZyme
Location: 2914 - 3945 (+)
Gene ID: HRGMv2_4639_10_5
Type: pfam
Location: 3997 - 5082 (+)
Type: pfam
Location: 3997 - 5082 (+)
Gene ID: HRGMv2_4639_10_6
Type: pfam
Location: 5147 - 5701 (+)
Type: pfam
Location: 5147 - 5701 (+)
Gene ID: HRGMv2_4639_10_7
Type: TC
Location: 5703 - 9086 (-)
Type: TC
Location: 5703 - 9086 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.