Cluster: HRGMv2_4639_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_08629
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_6 | HRGMv2_4639_6_74 | 82709 | 83695 | - | GT2 |
| TC | HRGMv2_4639_6 | HRGMv2_4639_6_75 | 83867 | 85258 | - | 1.B.17.1.3 |
| TC | HRGMv2_4639_6 | HRGMv2_4639_6_76 | 85266 | 86585 | - | 8.A.1.3.3 |
| TC | HRGMv2_4639_6 | HRGMv2_4639_6_77 | 86582 | 88354 | - | 3.A.1.110.10 |
Gene ID: HRGMv2_4639_6_74
Type: CAZyme
Location: 82709 - 83695 (-)
Type: CAZyme
Location: 82709 - 83695 (-)
Gene ID: HRGMv2_4639_6_75
Type: TC
Location: 83867 - 85258 (-)
Type: TC
Location: 83867 - 85258 (-)
Gene ID: HRGMv2_4639_6_76
Type: TC
Location: 85266 - 86585 (-)
Type: TC
Location: 85266 - 86585 (-)
Gene ID: HRGMv2_4639_6_77
Type: TC
Location: 86582 - 88354 (-)
Type: TC
Location: 86582 - 88354 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.