Cluster: HRGMv2_4639_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_5 | HRGMv2_4639_5_25 | 26888 | 27931 | + | GH5_5 |
| pfam | HRGMv2_4639_5 | HRGMv2_4639_5_26 | 28009 | 28392 | + | GCV_H |
| pfam | HRGMv2_4639_5 | HRGMv2_4639_5_27 | 28473 | 28787 | - | DUF2388 |
| TC | HRGMv2_4639_5 | HRGMv2_4639_5_28 | 28875 | 33221 | - | 2.A.21.9.1 |
| TC | HRGMv2_4639_5 | HRGMv2_4639_5_29 | 33259 | 35040 | - | 3.A.15.4.1 |
Gene ID: HRGMv2_4639_5_25
Type: CAZyme
Location: 26888 - 27931 (+)
Type: CAZyme
Location: 26888 - 27931 (+)
Gene ID: HRGMv2_4639_5_26
Type: pfam
Location: 28009 - 28392 (+)
Type: pfam
Location: 28009 - 28392 (+)
Gene ID: HRGMv2_4639_5_27
Type: pfam
Location: 28473 - 28787 (-)
Type: pfam
Location: 28473 - 28787 (-)
Gene ID: HRGMv2_4639_5_28
Type: TC
Location: 28875 - 33221 (-)
Type: TC
Location: 28875 - 33221 (-)
Gene ID: HRGMv2_4639_5_29
Type: TC
Location: 33259 - 35040 (-)
Type: TC
Location: 33259 - 35040 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.