Cluster: HRGMv2_4639_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_4 | HRGMv2_4639_4_11 | 9991 | 12666 | - | GH5_5 | GH5_5 |
| pfam | HRGMv2_4639_4 | HRGMv2_4639_4_12 | 13109 | 13897 | + | Exo_endo_phos |
| NULL(UNKNOWN) | HRGMv2_4639_4 | HRGMv2_4639_4_13 | 13904 | 14296 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4639_4 | HRGMv2_4639_4_14 | 14557 | 15402 | + | 3.A.23.1.1 |
Gene ID: HRGMv2_4639_4_11
Type: CAZyme
Location: 9991 - 12666 (-)
Type: CAZyme
Location: 9991 - 12666 (-)
Gene ID: HRGMv2_4639_4_12
Type: pfam
Location: 13109 - 13897 (+)
Type: pfam
Location: 13109 - 13897 (+)
Gene ID: HRGMv2_4639_4_13
Type:
Location: 13904 - 14296 (-)
Type:
Location: 13904 - 14296 (-)
Gene ID: HRGMv2_4639_4_14
Type: TC
Location: 14557 - 15402 (+)
Type: TC
Location: 14557 - 15402 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.