Cluster: HRGMv2_4639_CGC42
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_01642
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_104 | HRGMv2_4639_104_8 | 8120 | 9571 | + | GT20 |
| pfam | HRGMv2_4639_104 | HRGMv2_4639_104_9 | 9933 | 10838 | - | AP_endonuc_2 |
| TC | HRGMv2_4639_104 | HRGMv2_4639_104_10 | 10890 | 12299 | - | 2.A.1.1.26 |
Gene ID: HRGMv2_4639_104_8
Type: CAZyme
Location: 8120 - 9571 (+)
Type: CAZyme
Location: 8120 - 9571 (+)
Gene ID: HRGMv2_4639_104_9
Type: pfam
Location: 9933 - 10838 (-)
Type: pfam
Location: 9933 - 10838 (-)
Gene ID: HRGMv2_4639_104_10
Type: TC
Location: 10890 - 12299 (-)
Type: TC
Location: 10890 - 12299 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.