Cluster: HRGMv2_4639_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_1 | HRGMv2_4639_1_65 | 79631 | 79960 | + | 9.B.21.2.1 |
| pfam | HRGMv2_4639_1 | HRGMv2_4639_1_66 | 80153 | 80536 | + | GreA_GreB | Rnk_N |
| NULL(UNKNOWN) | HRGMv2_4639_1 | HRGMv2_4639_1_67 | 80533 | 80811 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4639_1 | HRGMv2_4639_1_68 | 80867 | 81853 | + | 1.A.35.1.1 |
| pfam | HRGMv2_4639_1 | HRGMv2_4639_1_69 | 81890 | 82765 | + | ApbA | NAD_binding_2 | F420_oxidored | NAD_binding_11 |
| CAZyme | HRGMv2_4639_1 | HRGMv2_4639_1_70 | 82774 | 83550 | - | GH114 |
Gene ID: HRGMv2_4639_1_65
Type: TC
Location: 79631 - 79960 (+)
Type: TC
Location: 79631 - 79960 (+)
Gene ID: HRGMv2_4639_1_66
Type: pfam
Location: 80153 - 80536 (+)
Type: pfam
Location: 80153 - 80536 (+)
Gene ID: HRGMv2_4639_1_67
Type:
Location: 80533 - 80811 (-)
Type:
Location: 80533 - 80811 (-)
Gene ID: HRGMv2_4639_1_68
Type: TC
Location: 80867 - 81853 (+)
Type: TC
Location: 80867 - 81853 (+)
Gene ID: HRGMv2_4639_1_69
Type: pfam
Location: 81890 - 82765 (+)
Type: pfam
Location: 81890 - 82765 (+)
Gene ID: HRGMv2_4639_1_70
Type: CAZyme
Location: 82774 - 83550 (-)
Type: CAZyme
Location: 82774 - 83550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.