Cluster: HRGMv2_4639_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_05790
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_93 | HRGMv2_4639_93_2 | 1153 | 1704 | - | 3.A.3.7.1 |
| TC | HRGMv2_4639_93 | HRGMv2_4639_93_3 | 1715 | 3745 | - | 3.A.3.7.2 |
| TC | HRGMv2_4639_93 | HRGMv2_4639_93_4 | 3747 | 5444 | - | 3.A.3.7.2 |
| NULL(UNKNOWN) | HRGMv2_4639_93 | HRGMv2_4639_93_5 | 5454 | 5543 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4639_93 | HRGMv2_4639_93_6 | 5686 | 5904 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4639_93 | HRGMv2_4639_93_7 | 6032 | 6892 | - | GH10 |
Gene ID: HRGMv2_4639_93_2
Type: TC
Location: 1153 - 1704 (-)
Type: TC
Location: 1153 - 1704 (-)
Gene ID: HRGMv2_4639_93_3
Type: TC
Location: 1715 - 3745 (-)
Type: TC
Location: 1715 - 3745 (-)
Gene ID: HRGMv2_4639_93_4
Type: TC
Location: 3747 - 5444 (-)
Type: TC
Location: 3747 - 5444 (-)
Gene ID: HRGMv2_4639_93_5
Type:
Location: 5454 - 5543 (-)
Type:
Location: 5454 - 5543 (-)
Gene ID: HRGMv2_4639_93_6
Type:
Location: 5686 - 5904 (-)
Type:
Location: 5686 - 5904 (-)
Gene ID: HRGMv2_4639_93_7
Type: CAZyme
Location: 6032 - 6892 (-)
Type: CAZyme
Location: 6032 - 6892 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.