Cluster: HRGMv2_4639_CGC37
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_03723
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_75 | HRGMv2_4639_75_12 | 12996 | 14630 | + | GH23 |
| pfam | HRGMv2_4639_75 | HRGMv2_4639_75_13 | 14825 | 15625 | + | adh_short | adh_short_C2 |
| TC | HRGMv2_4639_75 | HRGMv2_4639_75_14 | 15682 | 16545 | - | 1.A.16.4.1 |
Gene ID: HRGMv2_4639_75_12
Type: CAZyme
Location: 12996 - 14630 (+)
Type: CAZyme
Location: 12996 - 14630 (+)
Gene ID: HRGMv2_4639_75_13
Type: pfam
Location: 14825 - 15625 (+)
Type: pfam
Location: 14825 - 15625 (+)
Gene ID: HRGMv2_4639_75_14
Type: TC
Location: 15682 - 16545 (-)
Type: TC
Location: 15682 - 16545 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.