Cluster: HRGMv2_4639_CGC34
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_05828
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_62 | HRGMv2_4639_62_27 | 23410 | 24111 | + | GT51 |
| pfam | HRGMv2_4639_62 | HRGMv2_4639_62_28 | 24108 | 24557 | + | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| STP | HRGMv2_4639_62 | HRGMv2_4639_62_29 | 24741 | 25595 | - | Sigma70_r2 | Sigma70_r4 |
| TC | HRGMv2_4639_62 | HRGMv2_4639_62_30 | 25757 | 26767 | - | 3.A.1.140.1 |
| TC | HRGMv2_4639_62 | HRGMv2_4639_62_31 | 26764 | 27438 | - | 3.A.1.140.1 |
| TC | HRGMv2_4639_62 | HRGMv2_4639_62_32 | 27435 | 28550 | - | 3.A.5.1.1 |
Gene ID: HRGMv2_4639_62_27
Type: CAZyme
Location: 23410 - 24111 (+)
Type: CAZyme
Location: 23410 - 24111 (+)
Gene ID: HRGMv2_4639_62_28
Type: pfam
Location: 24108 - 24557 (+)
Type: pfam
Location: 24108 - 24557 (+)
Gene ID: HRGMv2_4639_62_29
Type: STP
Location: 24741 - 25595 (-)
Type: STP
Location: 24741 - 25595 (-)
Gene ID: HRGMv2_4639_62_30
Type: TC
Location: 25757 - 26767 (-)
Type: TC
Location: 25757 - 26767 (-)
Gene ID: HRGMv2_4639_62_31
Type: TC
Location: 26764 - 27438 (-)
Type: TC
Location: 26764 - 27438 (-)
Gene ID: HRGMv2_4639_62_32
Type: TC
Location: 27435 - 28550 (-)
Type: TC
Location: 27435 - 28550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.