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Cluster: HRGMv2_4639_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4639_45 HRGMv2_4639_45_15 19579 21858 + GH3
TF HRGMv2_4639_45 HRGMv2_4639_45_16 22339 23277 + HTH_1
pfam HRGMv2_4639_45 HRGMv2_4639_45_17 23296 25056 - FAD_binding_4 | Lact-deh-memb
TC HRGMv2_4639_45 HRGMv2_4639_45_18 25136 26479 - 2.A.1.14.3
pfam HRGMv2_4639_45 HRGMv2_4639_45_19 26640 27776 - Fe-ADH | Fe-ADH_2 | ADH_Fe_C
sulfatase HRGMv2_4639_45 HRGMv2_4639_45_20 27968 28717 + S1_13
TC HRGMv2_4639_45 HRGMv2_4639_45_21 28915 30915 + 1.B.52.2.1
TC HRGMv2_4639_45 HRGMv2_4639_45_22 30966 32939 - 2.A.15.1.9
TF HRGMv2_4639_45 HRGMv2_4639_45_23 33022 33870 - HTH_AraC | HTH_AraC
pfam HRGMv2_4639_45 HRGMv2_4639_45_24 33888 34487 - LysE
TC HRGMv2_4639_45 HRGMv2_4639_45_25 34645 36090 + 2.A.21.9.1
Gene ID: HRGMv2_4639_45_15
Type: CAZyme
Location: 19579 - 21858 (+)
Gene ID: HRGMv2_4639_45_16
Type: TF
Location: 22339 - 23277 (+)
Gene ID: HRGMv2_4639_45_17
Type: pfam
Location: 23296 - 25056 (-)
Gene ID: HRGMv2_4639_45_18
Type: TC
Location: 25136 - 26479 (-)
Gene ID: HRGMv2_4639_45_19
Type: pfam
Location: 26640 - 27776 (-)
Gene ID: HRGMv2_4639_45_20
Type: sulfatase
Location: 27968 - 28717 (+)
Gene ID: HRGMv2_4639_45_21
Type: TC
Location: 28915 - 30915 (+)
Gene ID: HRGMv2_4639_45_22
Type: TC
Location: 30966 - 32939 (-)
Gene ID: HRGMv2_4639_45_23
Type: TF
Location: 33022 - 33870 (-)
Gene ID: HRGMv2_4639_45_24
Type: pfam
Location: 33888 - 34487 (-)
Gene ID: HRGMv2_4639_45_25
Type: TC
Location: 34645 - 36090 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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