Cluster: HRGMv2_4639_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_38 | HRGMv2_4639_38_20 | 16153 | 17307 | - | 3.A.1.12.10 |
| TC | HRGMv2_4639_38 | HRGMv2_4639_38_21 | 17318 | 17977 | - | 3.A.1.12.10 |
| TC | HRGMv2_4639_38 | HRGMv2_4639_38_22 | 17981 | 18883 | - | 3.A.1.12.10 |
| TC | HRGMv2_4639_38 | HRGMv2_4639_38_23 | 18893 | 19603 | - | 3.A.1.12.14 |
| NULL(UNKNOWN) | HRGMv2_4639_38 | HRGMv2_4639_38_24 | 20324 | 20515 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4639_38 | HRGMv2_4639_38_25 | 20834 | 21883 | + | GH5_5 |
Gene ID: HRGMv2_4639_38_20
Type: TC
Location: 16153 - 17307 (-)
Type: TC
Location: 16153 - 17307 (-)
Gene ID: HRGMv2_4639_38_21
Type: TC
Location: 17318 - 17977 (-)
Type: TC
Location: 17318 - 17977 (-)
Gene ID: HRGMv2_4639_38_22
Type: TC
Location: 17981 - 18883 (-)
Type: TC
Location: 17981 - 18883 (-)
Gene ID: HRGMv2_4639_38_23
Type: TC
Location: 18893 - 19603 (-)
Type: TC
Location: 18893 - 19603 (-)
Gene ID: HRGMv2_4639_38_24
Type:
Location: 20324 - 20515 (+)
Type:
Location: 20324 - 20515 (+)
Gene ID: HRGMv2_4639_38_25
Type: CAZyme
Location: 20834 - 21883 (+)
Type: CAZyme
Location: 20834 - 21883 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.