Cluster: HRGMv2_4639_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_31 | HRGMv2_4639_31_15 | 13869 | 14267 | + | 9.B.35.1.2 |
| CAZyme | HRGMv2_4639_31 | HRGMv2_4639_31_16 | 14897 | 15670 | + | GT73 |
| sulfatase | HRGMv2_4639_31 | HRGMv2_4639_31_17 | 15681 | 16424 | - | S1_2 |
| TC | HRGMv2_4639_31 | HRGMv2_4639_31_18 | 16650 | 17087 | - | 9.B.27.3.3 |
Gene ID: HRGMv2_4639_31_15
Type: TC
Location: 13869 - 14267 (+)
Type: TC
Location: 13869 - 14267 (+)
Gene ID: HRGMv2_4639_31_16
Type: CAZyme
Location: 14897 - 15670 (+)
Type: CAZyme
Location: 14897 - 15670 (+)
Gene ID: HRGMv2_4639_31_17
Type: sulfatase
Location: 15681 - 16424 (-)
Type: sulfatase
Location: 15681 - 16424 (-)
Gene ID: HRGMv2_4639_31_18
Type: TC
Location: 16650 - 17087 (-)
Type: TC
Location: 16650 - 17087 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.