Cluster: HRGMv2_4639_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_25 | HRGMv2_4639_25_39 | 48464 | 50830 | - | GH65 |
| STP | HRGMv2_4639_25 | HRGMv2_4639_25_40 | 50827 | 51786 | - | PfkB |
| pfam | HRGMv2_4639_25 | HRGMv2_4639_25_41 | 51892 | 52566 | - | DUF2238 |
| TC | HRGMv2_4639_25 | HRGMv2_4639_25_42 | 52726 | 53721 | - | 3.D.4.3.1 |
| TC | HRGMv2_4639_25 | HRGMv2_4639_25_43 | 53721 | 55100 | - | 3.D.4.3.2 |
Gene ID: HRGMv2_4639_25_39
Type: CAZyme
Location: 48464 - 50830 (-)
Type: CAZyme
Location: 48464 - 50830 (-)
Gene ID: HRGMv2_4639_25_40
Type: STP
Location: 50827 - 51786 (-)
Type: STP
Location: 50827 - 51786 (-)
Gene ID: HRGMv2_4639_25_41
Type: pfam
Location: 51892 - 52566 (-)
Type: pfam
Location: 51892 - 52566 (-)
Gene ID: HRGMv2_4639_25_42
Type: TC
Location: 52726 - 53721 (-)
Type: TC
Location: 52726 - 53721 (-)
Gene ID: HRGMv2_4639_25_43
Type: TC
Location: 53721 - 55100 (-)
Type: TC
Location: 53721 - 55100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.