Cluster: HRGMv2_4639_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_25 | HRGMv2_4639_25_6 | 10060 | 11238 | + | GT4 |
| STP | HRGMv2_4639_25 | HRGMv2_4639_25_7 | 11229 | 12407 | + | Pyr_redox |
| CAZyme | HRGMv2_4639_25 | HRGMv2_4639_25_8 | 12404 | 13537 | + | GH1 |
| TC | HRGMv2_4639_25 | HRGMv2_4639_25_9 | 13534 | 15300 | + | 3.A.1.210.11 |
Gene ID: HRGMv2_4639_25_6
Type: CAZyme
Location: 10060 - 11238 (+)
Type: CAZyme
Location: 10060 - 11238 (+)
Gene ID: HRGMv2_4639_25_7
Type: STP
Location: 11229 - 12407 (+)
Type: STP
Location: 11229 - 12407 (+)
Gene ID: HRGMv2_4639_25_8
Type: CAZyme
Location: 12404 - 13537 (+)
Type: CAZyme
Location: 12404 - 13537 (+)
Gene ID: HRGMv2_4639_25_9
Type: TC
Location: 13534 - 15300 (+)
Type: TC
Location: 13534 - 15300 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.