Cluster: HRGMv2_4639_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_02170
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_23 | HRGMv2_4639_23_29 | 30546 | 32186 | + | 1.B.52.2.1 |
| NULL(UNKNOWN) | HRGMv2_4639_23 | HRGMv2_4639_23_30 | 32352 | 32606 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4639_23 | HRGMv2_4639_23_31 | 32988 | 33881 | + | adh_short | KR | adh_short_C2 |
| CAZyme | HRGMv2_4639_23 | HRGMv2_4639_23_32 | 33887 | 35686 | + | GH15 |
Gene ID: HRGMv2_4639_23_29
Type: TC
Location: 30546 - 32186 (+)
Type: TC
Location: 30546 - 32186 (+)
Gene ID: HRGMv2_4639_23_30
Type:
Location: 32352 - 32606 (+)
Type:
Location: 32352 - 32606 (+)
Gene ID: HRGMv2_4639_23_31
Type: pfam
Location: 32988 - 33881 (+)
Type: pfam
Location: 32988 - 33881 (+)
Gene ID: HRGMv2_4639_23_32
Type: CAZyme
Location: 33887 - 35686 (+)
Type: CAZyme
Location: 33887 - 35686 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.